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Gut bacterial composition shows sex-specific shifts during breeding season in ex situ managed black-footed ferrets.
DeCandia AL, Adeduro L, Thacher P, Crosier A, Marinari P, Bortner R, Garelle D, Livieri T, Santymire R, Comizzoli P, Maslanka M, Maldonado JE, Koepfli KP, Muletz-Wolz C, Bornbusch SL. DeCandia AL, et al. Among authors: koepfli kp. J Hered. 2023 Oct 27:esad065. doi: 10.1093/jhered/esad065. Online ahead of print. J Hered. 2023. PMID: 37886904
These results have important implications for ex situ management practices that can improve the gut microbial health and long-term viability of black-footed ferrets....
These results have important implications for ex situ management practices that can improve the gut microbial health and long-term vi …
The contribution of historical processes to contemporary extinction risk in placental mammals.
Wilder AP, Supple MA, Subramanian A, Mudide A, Swofford R, Serres-Armero A, Steiner C, Koepfli KP, Genereux DP, Karlsson EK, Lindblad-Toh K, Marques-Bonet T, Munoz Fuentes V, Foley K, Meyer WK; Zoonomia Consortium‡; Ryder OA, Shapiro B. Wilder AP, et al. Among authors: koepfli kp. Science. 2023 Apr 28;380(6643):eabn5856. doi: 10.1126/science.abn5856. Epub 2023 Apr 28. Science. 2023. PMID: 37104572 Free PMC article.
We find that species with smaller historical N(e) carry a proportionally larger burden of deleterious alleles owing to long-term accumulation and fixation of genetic load and have a higher risk of extinction. ...
We find that species with smaller historical N(e) carry a proportionally larger burden of deleterious alleles owing to long-term accu …
Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories.
Bursell MG, Dikow RB, Figueiró HV, Dudchenko O, Flanagan JP, Aiden EL, Goossens B, Nathan SKSS, Johnson WE, Koepfli KP, Frandsen PB. Bursell MG, et al. Among authors: koepfli kp. iScience. 2022 Dec 9;25(12):105647. doi: 10.1016/j.isci.2022.105647. eCollection 2022 Dec 22. iScience. 2022. PMID: 36590460 Free PMC article.
Understanding their patterns of genetic variation can provide critical insights on past genetic erosion and a baseline for understanding their long-term conservation needs. As a step toward this goal, we present draft genome assemblies for the two clouded leopard species t …
Understanding their patterns of genetic variation can provide critical insights on past genetic erosion and a baseline for understanding the …
Chromosomal-level genome assembly of the scimitar-horned oryx: Insights into diversity and demography of a species extinct in the wild.
Humble E, Dobrynin P, Senn H, Chuven J, Scott AF, Mohr DW, Dudchenko O, Omer AD, Colaric Z, Lieberman Aiden E, Al Dhaheri SS, Wildt D, Oliaji S, Tamazian G, Pukazhenthi B, Ogden R, Koepfli KP. Humble E, et al. Among authors: koepfli kp. Mol Ecol Resour. 2020 Nov;20(6):1668-1681. doi: 10.1111/1755-0998.13181. Epub 2020 Jun 7. Mol Ecol Resour. 2020. PMID: 32365406 Free PMC article.
The scimitar-horned oryx (Oryx dammah) is a North African antelope that has been extinct in the wild since the early 1980s and is the focus of a large-scale and long-term reintroduction project. To enable the selection of suitable founder individuals, facilitate post-relea …
The scimitar-horned oryx (Oryx dammah) is a North African antelope that has been extinct in the wild since the early 1980s and is the focus …
Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations.
Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS. Koepfli KP, et al. G3 (Bethesda). 2019 Jun 5;9(6):1785-1793. doi: 10.1534/g3.119.400084. G3 (Bethesda). 2019. PMID: 31000506 Free PMC article.
The sable antelope genome constitutes a valuable resource for assessing genome-wide diversity and evolutionary potential, thereby facilitating long-term conservation of this charismatic species....
The sable antelope genome constitutes a valuable resource for assessing genome-wide diversity and evolutionary potential, thereby facilitati …
Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours.
Kukekova AV, Johnson JL, Xiang X, Feng S, Liu S, Rando HM, Kharlamova AV, Herbeck Y, Serdyukova NA, Xiong Z, Beklemischeva V, Koepfli KP, Gulevich RG, Vladimirova AV, Hekman JP, Perelman PL, Graphodatsky AS, O'Brien SJ, Wang X, Clark AG, Acland GM, Trut LN, Zhang G. Kukekova AV, et al. Among authors: koepfli kp. Nat Ecol Evol. 2018 Sep;2(9):1479-1491. doi: 10.1038/s41559-018-0611-6. Epub 2018 Aug 6. Nat Ecol Evol. 2018. PMID: 30082739 Free PMC article.
Strains of red fox (Vulpes vulpes) with markedly different behavioural phenotypes have been developed in the famous long-term selective breeding programme known as the Russian farm-fox experiment. ...
Strains of red fox (Vulpes vulpes) with markedly different behavioural phenotypes have been developed in the famous long-term selecti …