Motif module map reveals enforcement of aging by continual NF-kappaB activity

Genes Dev. 2007 Dec 15;21(24):3244-57. doi: 10.1101/gad.1588507. Epub 2007 Nov 30.

Abstract

Aging is characterized by specific alterations in gene expression, but their underlying mechanisms and functional consequences are not well understood. Here we develop a systematic approach to identify combinatorial cis-regulatory motifs that drive age-dependent gene expression across different tissues and organisms. Integrated analysis of 365 microarrays spanning nine tissue types predicted fourteen motifs as major regulators of age-dependent gene expression in human and mouse. The motif most strongly associated with aging was that of the transcription factor NF-kappaB. Inducible genetic blockade of NF-kappaB for 2 wk in the epidermis of chronologically aged mice reverted the tissue characteristics and global gene expression programs to those of young mice. Age-specific NF-kappaB blockade and orthogonal cell cycle interventions revealed that NF-kappaB controls cell cycle exit and gene expression signature of aging in parallel but not sequential pathways. These results identify a conserved network of regulatory pathways underlying mammalian aging and show that NF-kappaB is continually required to enforce many features of aging in a tissue-specific manner.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aging / metabolism*
  • Amino Acid Motifs*
  • Amino Acid Sequence
  • Animals
  • Electrophoretic Mobility Shift Assay
  • Gene Expression Regulation
  • Humans
  • Immunohistochemistry
  • Mice
  • Molecular Sequence Data
  • NF-kappa B / metabolism*
  • Phenotype

Substances

  • NF-kappa B

Associated data

  • GEO/GSE3845